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Notes from Google Doc with @smvelasquez
(MV) As I went along I realized that I could add new metagenotypes from scratch or add new phenotypes to an existing metagenotype
(AC 21/03/22) Yes, and it …
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* [MONDO:0008345](https://monarchinitiative.org/disease/MONDO:0008345) idiopathic pulmonary fibrosis
* [MONDO:0004955](https://monarchinitiative.org/disease/MONDO:0004955) metabolic syndrome
* [MON…
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The two data sources are:
1.
https://github.com/beoutbreakprepared/nCoV2019/tree/master/latest_data
2.
https://docs.google.com/spreadsheets/d/e/2PACX-1vQU0SIALScXx8VXDX7yKNKWWPKE1YjFlWc6VTEVSN45Ck…
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Some links are dead in the phenotype page.
For e.g., in http://biccsrv3.epfl.ch:32786/phenotypes/2636
The GWAS analysis page is dead?
Also, in this page: http://biccsrv3.epfl.ch:32786/phenoty…
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All of the data is here (84G total):
http://genomics.lbl.gov/supplemental/bigfit/
The numerical relative growth data would have to be converted - growth vs no growth, via eg thresholding.
Just …
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on the page for noto:
http://beta.monarchinitiative.org/gene/ZFIN:ZDB-GENE-990415-75
the deficiency http://zfin.org/action/feature/view/ZDB-ALT-991201-146 is not showing up. not sure if this is a sc…
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Hi,
I have been enjoying FastPG now for some time, clustering up to 8 million cells in one hour or more on my iMAC.
I am now stuck on a new dataset that just will not cluster. Im using the same …
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**Description**:
The frequency of use (FOU) phenotype for NGC continues to be flipped in the opposite direction from the other NGC phenotypes (OAall and OAexp). See figures in GitHub issue 140 in the…
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Now that the cite key is exported, it would be great that the bibliography can be exported in the default format at the same time, please consider adding it, thanks a lot!
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Hi, I'm trying to run a toy example with GEPSi, but am running into an error at the first step, to convert my genotypes to h5 format the way GEPSi expects. Here is my toy vcf generated from an msprime…