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My understanding (from @hpages) is that transposed assay data matrices should be supported in HDF files, but after downloading Human Cell Atlas h5ad data at https://data.humancellatlas.org/explore/pro…
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When I use `skim()` to check the distribution of my data, I get some "..." in the histogram. It only exists in some variables. What do the dots mean?
. Since a…
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When I try the merge script as shown bellow:
STEP7 Merge objects
Now we are merging the Seurat objects to create one unified Seurat object for downstream analysis.
```
pbmc
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Hi Nils! First of all thanks for providing IMC users with great analysis tools :) I`m trying to use the pipeline you have made and everything works fine until part 9.3. This is done using the example …
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Hi. @chrisamiller
I have run sciClone on my own data. Here is the data for sample 15.
```
> vaf_list[[15]] # Yes. Only one variants.
Chromosome Start_Position bam_ref_count bam_alt_count …
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Dear @hpages,
I am getting the following error:
`Error in .make_Seqinfo_from_genome(genome) : ` when I try to run `forgeBSgenomeDataPkg`.
I'm attaching the `seed.dcf` file and the R session inf…