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cnio-bu
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beyondcell
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.
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Error in specifying PCs for bcUMAP
#160
katimbach
closed
2 months ago
1
Pin both seurat and seuratobject versions
#159
SGMartin
opened
2 months ago
1
Error in analasys WorkFlow
#158
jesusvaliente015
opened
2 months ago
3
Error in bcUMAP...
#157
Silve-Ruano
closed
2 months ago
8
Error in images slot of bcScore function
#156
Silve-Ruano
closed
2 months ago
4
No puedo instalar el entorno de beyond cell en anaconda
#155
jesusvaliente015
closed
2 months ago
0
Error in GenerateGenesets(PSc)
#154
AcetylCoALab
closed
2 months ago
1
Fix error in install beyondcell step
#153
mj-jimenez
opened
5 months ago
0
Update meta.yaml
#152
mj-jimenez
closed
4 months ago
0
Dependency errors
#151
mj-jimenez
closed
4 months ago
0
Add Spatial Transcriptomics tutorial example
#150
mj-jimenez
closed
4 months ago
0
error in bcRegressout
#149
Lukadon77
opened
5 months ago
2
Error in bcRegressOut
#148
mpaya
opened
6 months ago
1
NA values in mean of ranked table
#147
mpaya
opened
6 months ago
1
Rank order
#146
mpaya
opened
6 months ago
0
GenerateGenesets
#145
z0402
closed
2 months ago
1
bcUMAP
#144
z0402
opened
7 months ago
0
bc4Squares
#143
kris-nader
closed
2 months ago
0
Error in irlba::irlba(L, nv = n, nu = 0, maxit = iters): function 'as_cholmod_sparse' not provided by package 'Matrix'
#142
wuyilin1234
closed
4 months ago
2
Fix #135
#141
mj-jimenez
closed
11 months ago
0
Fix bug when the user inputs a custom GMT
#140
mj-jimenez
closed
12 months ago
0
Update beyondcell to version 2.2.0
#139
mj-jimenez
closed
11 months ago
0
Update READMEs
#138
mj-jimenez
closed
1 year ago
0
Fix residuals computation
#137
mj-jimenez
closed
1 year ago
0
Fix GitHub workflow
#136
mj-jimenez
closed
1 year ago
0
Error in bcRanks residuals computation
#135
mj-jimenez
closed
11 months ago
2
Fix bug in bcScore
#134
mj-jimenez
closed
1 year ago
0
Table of Beyondcell scores for a specific drug or signature for each cell barcodes
#133
tc86
closed
1 year ago
2
@counts and @data matrices are identical. Is @data normalized?.
#132
SGMartin
closed
1 year ago
1
Update readme instructions for genesets
#131
SGMartin
closed
1 year ago
1
129 update readme
#130
SGMartin
closed
1 year ago
0
Error about GenerateGenesets
#129
simaxiaoyao
closed
3 months ago
9
Beyondcell 2.1 release
#128
mj-jimenez
closed
1 year ago
0
Error in x[1] : object of type 'S4' is not subsettable
#127
Phoenix12580
closed
1 year ago
0
Correct error when topmanes are drug names
#126
mj-jimenez
closed
1 year ago
0
Match bc4Squares title with the correct level
#125
mj-jimenez
closed
1 year ago
0
Update line in bcRanks
#124
mj-jimenez
closed
1 year ago
0
Topnames not working with drug names
#123
mj-jimenez
closed
1 year ago
1
Error in bc4Squares title
#122
mj-jimenez
closed
1 year ago
1
Replace slot data by normalized when possible
#121
mj-jimenez
closed
1 year ago
0
Error in bcRanks
#120
mj-jimenez
closed
1 year ago
4
Correct error when spatial = TRUE and images = NULL
#119
mj-jimenez
closed
1 year ago
0
Do not return NaN values when expr.thres = 0
#118
mj-jimenez
closed
1 year ago
0
Update test data
#117
mj-jimenez
closed
1 year ago
0
Update beyondcell collections
#116
mj-jimenez
closed
1 year ago
0
Error in bcClusters/bcSignatures when spatial = TRUE and images = NULL
#115
mj-jimenez
closed
1 year ago
0
bcScore returns NaN values when expr.thres = 0
#114
mj-jimenez
closed
1 year ago
0
Add no.missing argument to bcScore
#113
mj-jimenez
opened
1 year ago
1
Draw spatial plots with specified images
#112
mj-jimenez
closed
1 year ago
0
Fix result subset to keep drugs only before imputation
#111
SGMartin
closed
1 year ago
0
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