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Hi all,
First of all, thank you very much for developing such a nice pipeline for us.
I am working on a very complicated grass genome with a diploid genome size of 5 Gb and a high SNP-level het…
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Hi, I wanted to ask if you could help me with canu metagenome assembly. I have tried the command you gave in this issue https://github.com/marbl/canu/issues/2150
It always starts to work but then i…
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Hi Ben,
Per our discussion on this [post](https://github.com/wwood/singlem/issues/35), I ran coverM in condense mode However, I have a few clarifying questions:
1. What does coverage mean here? Is…
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https://mp.weixin.qq.com/s/zQunqR9RbrFbjxfHmetgEw
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Hi .
My canu job keeps failing at the assembly stage. I'm running my analysis on canu 2.1.1. on the university linux server with slurm scheduler, I've tried repeating twice and now i'm at the ask …
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Hi,
I want to build the annotation files by myself cause I am using hg38. Would you please tell me how to build them?
Best,
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https://mp.weixin.qq.com/s/G7hFi-Nc5p5u6qfQsqxpZg
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Hi
I am using a high coverage depth pacbio hifi dataset with depth 300+
I noticed that the default `--mode pacbio` includes `--max-cov 150` which is less than my actual avg data depth
```
pacbio…
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Hi, dear author, is it possible to extract the mitochondrial genome using Rad-seq dataset in MitoZ with or without reference methods? What command or parameter setting should I use if I can use a ref…
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Hi,
I'm trying to run CRADLE (v0.26.1) for our whole genome STARR-seq experiment in two different conditions (Ethanol: control, DHT: experiment) which is the same experiment (and the same samples; …