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Rationale: currently characterization of environmental antimicrobial resistance genes is lacking as the potential bacterial pool is too large to sample. Using existing SRA data, if we find a homolog o…
bfjia updated
4 years ago
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Hello!,
I am running bismark with the following command:
`bismark --output_dir $output_path/44_test -u 100 --multicore 4 --genome_folder /home/vopazo/Data/anotacion/ -1 $input_path/Out_44_1_test…
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Note: The info here has been updated on 3 Oct 2018 based on errors pointed out by @andrewprzh . This changes some of the discussion about strand-specificity.
First off, thanks for developing and su…
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## 5/12/2019
### Alternative Species
Downloaded the other species data in the directory `/scratch/jpm73279/04.lncRNA/06.annotate_other_species_2020-05-11` using the script `submit_fastq_dump_downl…
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`Bio/Alphabet/__init__.py` defines a `ThreeLetterProtein` alphabet consisting of three-letter amino acids:
```python
class ThreeLetterProtein(Alphabet):
"""Three letter protein alphabet."""
…
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Hi ,brian
After trinity assembly from 21 samples, i got a trinity.fasta. And i try to remove the redundance using cd-hit-est with command "cd-hit-est -i Trinity.fasta -o Trinity_cd_hit.fasta -M 20…
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As part of the move away from Chado via microservices we need to implement a script that loads data into the GCV Redis database directly from GFF files. There is already a script that loads data from …
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How many novel Cornoavirus species in nature remain to be discovered? This is a fundamental biological question that we are uniquely positioned to answer. Estimating the number of things that nobody h…
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Dear developers:
Thanks for developing this software. Recently I was trying to identify NLR genes in tomato reference genome Heinz 1706 SL4.0 and found that NLR-parser returned 242 NLR candidates u…
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@serewilliams : We have been noticing that some of the bolded words in the print version do not show up online, but we do want the students to include all bolded terms from the print version. To help …