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Dear Dr Sara,
Thanks truly for providing such combo dose of Bioinformatics online MOOCs and roadmaps. There are two courses that I stumbled upon that I think would be of a great benefit to be adde…
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Looks like there has been some progress (including changes to the CLI) since the latest release. Do you plan to create a new release? I'd like to install a newer version to support users on our syst…
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Current status of datasets:
https://docs.google.com/document/d/1a8uu0-GclIa9yy2Hs_AkoSJnMEOHLZkQdmCzwWlueoQ/edit#
Test-cases suggested by Francesca:
1. Mouse data: it would be a completely new ap…
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https://appyters.maayanlab.cloud/Bulk_RNA_seq/be6385dcb31612ac4c118c287fc1097ff9c85076/
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Hi,
I am really excited to use this tool. However, I am a bit confused about the parameters and the kind of input required.
hence I kindly request your comments on the following. A vignette with exa…
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Hi, I have a question about using bulk RNA-seq and scRNA-seq with SCENIC for a single analysis. Would it be advisable to run SCENIC using a concatenated bulk RNA-seq matrix and a pseudobulked single c…
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https://mp.weixin.qq.com/s/tSvoTFnNXDt_0dGE7gKKhA
ixxmu updated
2 years ago
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**Version info**
- bcbio version (`bcbio_nextgen.py --version`): 1.2.8
- OS name and version (`lsb_release -ds`): Ubuntu 20.04.2 LTS
**To Reproduce**
Exact bcbio command you have used:
```
/h…
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Dear Kevin,
I hope your summer is going good!
I have a question about reasonaTE:
I there at possibility to retrieve the consensus sequences used for each transposon class?
Thanks :)
Kind …
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Hi @alex-d13 the vignette and the tool look very good!
I have a few suggestions/questions:
- [x] Sfaira: you could briefly explain what it is when you mention it, so users that do not know it, u…