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**Jose Da Silva ** created a patch on 2005-07-23 06:35:12 UTC**
*(Orig. from https://sourceforge.net/p/aspell/patches/115)*
Hopefully did this correctly.
Makefile.am appears to apply for both 0.6…
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The previous version of `cwl-runner` I could do this:
```
cwl-runner cat.cwl --input README.md
```
using the following workflow (performs a simple `cat`):
```
#!/usr/bin/env cwl-runner
cwlVersion:…
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When using the Dockstore CLI it would be nice to be able to manually specify a local CWL for use with the launch feature:
'''
ubuntu@brian-pcawg-bwa-testing:~/gitroot/CGP-Somatic-Docker$ dockstore la…
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Options:
1. Cite the [2015 BOSC talk](http://f1000research.com/slides/4-278):
> Amstutz P, Tijanić N, Soiland-Reyes S et al. Portable workflow and tool descriptions with the CWL (Common Workflo…
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`cwltool --update` does not seem to accept `draft-3` as a valid version (and it only updates as far as dev4) which is odd because it seems like it should https://github.com/common-workflow-language/cw…
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As discussed in today's videochat:
1. The spec in draft-4 is clarified: filenames are not guaranteed to be preserved; `cwltool` scrambles file names to enforce this
2. As in 1, but a flag is added to …
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Hi,
Trying to run the lobSTR example, I discover that `node-engine.cwl` is a link to a file `/engines/node-engine.cwl`. However, this file does not exist in the repository, and causes the example to …
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What sure what is involved/required to support docker.
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A lightweight CWL java stack along lines of existing python tools without any support for complex execution environments.
It should have an API providing:
- methods for processing tool descriptions (…
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This issue is simply intended to be a long running ticket where we
can log correspondence pertinent to integrating the Common Workflow
Language with bcbio.
Brad, after you create a stable docker imag…