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Hi,
Regarding the @tropfenameimer comment on the build of Gallus gallus cisTarget database issue #4, I tried to take similar steps for building pig cisTarget database.
First, I got the regulato…
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Hi there,
Thank you for developing this handy tool; I've been using it for a long time. Recently, I wanted to perform a more challenging test on my tool by adjusting the read length of the simulate…
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Hi,
I am using angsd to produce fasta sequences, these are automatically gzipped fasta files.
If I open the fasta file with R-Biostrings the sequence compositon looks like this:
```
dna alph…
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First I tried
`ls dir/*.fa|xargs -i STAR --runMode genomeGenerate --genomeDir STAR_genomeDir --genomeFastaFiles {}`
Then I found that the final results only used the last .fa file (in the list gener…
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This is probably a stupid question but how do you run the program? I have cd into the directory that I have my .fasta file in and tried combinations of
abritamr --run path to fasta
abritamr --run…
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Hello,
I am currently testing the use of MSA Viewers for the use in a react application.
After importing alignment.js to throw away project for testing, the view appears like this:
If I imp…
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I've experienced a memory leak when using the python `mappy.Aligner` when initialized with a sequence file/FASTA (this is within [Megalodon](https://github.com/nanoporetech/megalodon)). This same memo…
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Hi,
I downloaded a fasta file generated with sixgill software, but I cannot open it normally. So I want to ask about the opening method.
fasta file:
[sixgill_glacial_subE.fasta.zip](https://gi…
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Hi,
I would like to assemble the plant mitochondrial genome from the whole genome data. The expected total genome size is 1.7 GB Including chloroplast, mitochondrial and nuclear genome). But the mit…
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Add GenBank, FASTA, GFF3 SynBioHub download options.