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take the following program:
```
from Bio.Align import PairwiseAligner
aligner = PairwiseAligner()
alns = aligner.align("GATTACA", "GATCA")
out = format(alns[0])
print(out)
```
With Bio…
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For about the millionth time I've just been writing a methods section for a manuscript, e.g. something like:
> Samples were sequenced to a depth of approximately 100 million 50-base pair, paired-e…
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Submitting Author: Simon van Heeringen (@simonvh)
Package Name: genomepy
One-Line Description of Package: simple and straightforward downloading and management of genomic data.
Repository Link (…
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Hi all,
I am trying to use quast with a reference (360Mbp) and one new assembly (450Mbp). Can the size be a problem? The reference come from illumina reads and the new assembly from pacbio. It is run…
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Dear @songtaogui :
I found a question in this bash file.
**${pre}.rmNPlant.ID-only** is generated in line 55（**cut -f 1 ${pre}.rmNPlant.ID > ${pre}.rmNPlant.ID-only**)
How does this assign a val…
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Hello Alex,
I`m having problems generating the index files of for the latest human genome build of hg19_CRCh38 from ensemble. Being a first time STAR user I installed a precompiled package from the…
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When I use this **Command:**
bam_files
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## Bug report
### Expected behavior and actual behavior
In the mapping step of nf-core sarek, fastqs should be aligned to a reference genome. This works perfectly with a subset of my sample she…
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### Description of the bug
Every time I run kallisto as a subworkflow, it crashes for memory reasons. However, unlike in #38, it crashes at the indexing stage instead of the bustools stage. It seems …
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Hi,
I've been trying to use strobealign from source using the current head, and have ran into a few issues. Maybe the solution is just wait for the stable release 😉
The first is trying to use the…