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Hi,
I used genomescope from this repo:
https://github.com/schatzlab/genomescope
and
https://github.com/tbenavi1/genomescope2.0
And got weird results:
From v1:
https://ibb.co/FXPYPgV
…
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http://doi.org/10.1101/069096 (also http://biorxiv.org/content/early/2016/08/11/069096 because the DOI isn't working for me)
**At a glance:** Uses a pretrained DeepSEA model (#13) to filter and group…
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I want to compare VNE (Von Neumann Entropy) in different regions on the genome.
In both entropyExample.m and entropyExampleExpanded, VNE can only be calculated for one chromosome
I note that in vn…
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Dear Prof. Wang,
I notice some annotation use "chr1" while others use '1' to represent chromosome. Is there any rule to determine how to select the style?
Here is example for "chr1"
```
==> …
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Hi,
I have a question of purge dups output.
The left graph is a genome assembl…
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### Operating System
macOS
### Other Linux
_No response_
### Workflow Version
v23.04.3
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No response_
### EPI2ME Ver…
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Dear Igraph team,
I'm working on a nursing home and hospital transmission study of SARS-CoV-2 using your igraph package to create and calculate with graphs. My current results are based on the crea…
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### What is the title of the roadmap you are submitting?
Roadmap to Bioinformatics
### Roadmap Link
# Bioinformatics Roadmap
**0. Why Bioinformatics?**
- **What is Bioinformatics?** Bioinfo…
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Hi @asd1289,
I have read your paper on pore-c—an excellent work.
Here, I wonder how you perform the whole genome RE chromunity analysis , i.e. the parameters and resolutions used in paper? I tr…
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**Related To**
- [ ] Bactopia
- [x] Bactopia Tools
**Is this related to a problem?**
A description of what the problem is. Ex. I'm always converting X to Y, cannot adjust parameter Z [...]
…