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Dear Dr. Liu,
I am trying to use MACS2 on human double-strand breaks files.
When I set the cutoff pvalue to 0.05 (in test14), I could get a lot of peaks, but the -log10(qvalue) column in the out…
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I will just update here each time I make the changes on our bissnp pipeline:
2013-3-5 (BisSNP-0.81.2)
1.changes in bissnp_pipeline:
enable the output of raw.bed and filter.bed
enable the skip fun…
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There is several tutorials that would need some ❤️
Most of the changes are newcomer-friendly 😄
We created a checklist of the possible contributions on the tutorials: https://galaxyproject.github…
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I first posted this problem on the cufflinks mailing list but no replies yet ( https://groups.google.com/forum/#!topic/tuxedo-tools-users/_E94jkdvMak )
The problem we are experiencing is that in GRCH…
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Using NA12878.ILLUMINA.SRP012400.Xprize_HiseqSRR636604.bam (ftp://ftp-trace.ncbi.nih.gov/giab/ftp/technical/NA12878_data_other_projects/alignment/NA12878.ILLUMINA.SRP012400.Xprize_HiseqSRR636604.bam) …
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These don't seem to be tested at all at the moment, there are only plugin tests. Would be useful for #1999..
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--vpp-libplacebo-shader appears to bypass the selected shader file and outputs with the selected resampler.
Tried using FSRCNNX_x2_16-0-4-1.glsl from: https://github.com/igv/FSRCNN-TensorFlow/release…
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Dear Mr. Hartley,
I run the junctionSeq on a cohort with 68 libraries and chose the **use.multigene.aggregates=TRUE** mode. Somehow in the result all bins in gene LY75 (ENSG00000223972+ENSG00000227…
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**Describe the bug**
Cancer caller hangs in a reproducible manner. The caller is started with 24 threads. Slowly the number of active threads appears to dwindle as I can see the CPU usage go down. …