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18 samples - have total RNA
need RNA-seq and sRNA libraries (to look at miRNA expression).
Looking for about 40-50 M reads 100PE.
thinking UW and Azenta?
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I included my log file below.
I have 300 samples at around 1x coverage and am trying to impute chromsome1.
Based on what I've read the error message I'm receiving should not occur as there will be p…
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>Description: The percentage of short paired-end sequencing [high quality](https://github.com/ga4gh/quality-control-wgs/blob/0290612d0237078dea7ae38dc13e680189fc46d1/metrics_definitions/metrics_defini…
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Hi, thanks for developing Dinopore. I want the train the Dinopore model from scratch. And I found the groundtruth_class_regression.tsv and the groundtruth_class_regression_all.tsv in codeocean. And t…
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Hi,
Thanks for developing Dinopore. I want to use Dinopore to quantify the A-to-I editing events in my nanopore data, so I followed the steps to process the data. In step 5 and step 6 of testing path…
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HEllo!
Thanks you for this wonderfull tool!
I am starting to analyze a set of 47 samples, shotgun Illumina paired sequencing on my computer before moving to a cluster (if I need to)
I trimme…
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Hi there,
I am trying to run miRge3 on 4 human miRNAseq samples. I am new to bioinformatics and self-learn very basic commands. I tried to check up online, but I am not sure how to understand and r…
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I'm presently using whatshap on a use case which might not be so common, specifically Illumina sequencing of a sequence capture library. Here the 'reference' is a de novo assembly of each of these…
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### Description of the bug
I'm running the test dataset using singularity profile and everything is running fine until this process:
NFCORE_VIRALRECON:ILLUMINA:VARIANTS_LONG_TABLE:MAKE_VARIANTS_LONG…
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Hi Arang,
I have a lot of Illumina data that lead to high amounts of read_only k-mers, which lowers my completeness even if I have a high QV. Is there a way to standarize the completeness by the se…