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Hi, I've been working on topic models for tweets. I trained my corpus on LDA model as well as CTM and ProdLDA. However, the coherence score for LDA is always higher for different number of topics. I…
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Some documents from submodules have code blocks with special syntax highlighting for certain types of files / languages. Read the docs doesn't recognize some of them, so if we want to have this format…
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**Current Behavior**
When requesting the getDataset? endpoint from a browser with cache, with the headers loaded `If-None-Match` and `If-Modified-Since` both loaded, the CloudFront server responds …
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Many scripts (inclucing our own) still use augur's `augur.utils.read_metadata` which [has been removed](https://github.com/nextstrain/augur/commit/040822c4c20daf596ee31c1a02a1d8294d785573) in favour o…
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JFYI:
Due to the webpage update, ROK publishes now the daily testing data instead of the cumulative one, and as OWID is probably only crawling this metric weekly, all the positivity rate and test d…
WWolf updated
2 years ago
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### Current Behavior
The geographic map is not appearing behind the geolocations in the mapbox image on our installed server as it does on the nexstrain.org server at https://nextstrain.org/monkeypox…
DrB-S updated
2 years ago
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用户登录中
(node:1676) Warning: Setting the NODE_TLS_REJECT_UNAUTHORIZED environment variable to '0' makes TLS connections and HTTPS requests insecure by disabling certificate verification.
(Use `no…
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**Current Behavior**
The Snakemake workflow now fails when not using the Docker runtime:
```
/bin/bash: line 1: nextalign2: command not found
```
and similar for `nextclade2`.
This is be…
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Hi,
I am trying to run nanopolish on my dataset. Everything seem to be going fine until the consensus step. The nanopolish indexing seem to be fine. I get all the expected files after indexing with…
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### Current Behavior
Running `nextstrain update` I get the following error:
```
failed to register layer: sync /var/lib/docker/image/overlay2/layerdb/tmp/write-set-226670863/diff: input/output erro…