-
I'm trying to simulate a single branch starting from one root to one leaf: `(C:1)E:0;`, but node C cannot be read when it doesn't have siblings. It can be solved by passing this tree structure instead…
-
Hi @tgvaughan
Great program!
I am attempting to visualize a network produced by PhyloNet, but I keep running into this error:
Expected token CLOSEP but found COLON (:) at string position 76.
Er…
-
### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
3.6.5 (v3.6.5:f59c0932b4, Mar 28 2018, 17:00:18) [MSC v.1900 64 bit (AMD64…
-
### Summary
- What does this package do? (explain in 50 words or less):
This package helps users to build a reasonable starting phylogeny for phylogenetic analysis.
In particular, this package…
-
Taxon responses will include total number of occurrences and start & end points (means adding the `age_scale` flag.
-
Hi Meren,
>anvi-self-test --version
Anvi'o version ...............................: 3
Profile DB version ...........................: 20
Contigs DB version ...........................: 9
Pan DB…
-
Hello,
I'm trying to run the evolverMammals example on an SGE cluster (where Docker and Singularity aren't supported) using the latest version of Cactus installed through git. My problem seems simi…
-
HI there,
We were following the instructions to install PICRUSt2 (installing it on a Mac with 16Gb of ram). First we got the Clon Repository. Then we started to install the pre-requisites and this…
-
For method A00 output the species tree annotated with posterior mean divergence times and population sizes, in a separate file called `FigTree.txt`. Use NEXUS format.
For method A01 output the best…
-
Hi,
Sorry for total PICRUSt newbie question. When I run statement as following:
```
root@ip-10-0-0-254:~/test_picrust# ancestral_state_reconstruction.py -i ./genome_prediction/format/KEGG/trait…