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Hi all,
I am integrating three datasets and after integration I want to find cell clusters. However, after I do that, all my `integrated_snn_res.*` memberships are all
This is the code I am usi…
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Hi CARD team,
I went through the CARD tutorial and noticed that the example sc_count input has the format of raw count (i.e. integer number). I wonder if I can use normalized expression data for sc…
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Hi,
When running scDBlFinder I run into the error: Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'colSums': Cholmod error 'problem…
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### Description of the bug
In v2.2.0 of the pipeline, the `INPUT_CHECK:SAMPLESHEET_CHECK` step will fail if the sample sheet has more than three fields (i.e., more than just the sample, fastq_1, and …
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Hi,
Thank you for publishing your new algorithm. I am really excited about it! I think it is a common obstacle to find the right markers on the protein level after doing single cell RNA seq.
Cou…
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@NathanSkene @KittyMurphy
I just noticed that the CTD originally included within MultiEWCE is incorrect. It was not processed to the level of gene properly.
```R
MultiEWCE::load_example_ctd()
``…
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Hi, I'm trying to launch run of spacemake
I've installed everything and bump into two errors:
first. `spacemake init --dropseq_tools /home/eugenea/bin/Drop-seq_tools-2.5.1 --download_species human…
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Currently in SenNet we only support primary data types but we need to add additional secondary data types that are supported by the dataset pipeline processing. Some of these secondary data types incl…
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Hi all!!
I'm having a similar issue as the ones reported here: https://github.com/scverse/scvi-tools/issues/221 and here: https://github.com/scverse/scvi-tools/issues/426.
In my case I'm trying…
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i have run this pipe in intratumoral model, and i got a result with 63 filtered cells and 5361 tumor cells.
is that means, in my data, there is no normal cells?
and what about the filtered cel…