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### Description of the bug
When analyzing non-duplex reads it makes sense to set filter_min_reads to an int, however. when setting `--filter_min_reads 1` you will encounter the following error:
` --…
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Hi,
The Phylip link in the Dockerfile does not work anymore. I think it must be replaced by https://phylipweb.github.io/phylip/download/phylip-3.697.tar.gz.
And I think this has been raised befo…
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A simple ping google.com is not working. Moreover, we are being unable to commit to git or install libraries to setup the python environment.
ghost updated
6 years ago
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Hi,
I'm trying to install signalp6 in a singularity/apptainer container to be able to run it on an hpc. When running the installation following error occurs:
```
[...]
━━━━━━━━━━━━━━━━━━━━…
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Hi,
I am running pySCENIC following this vignette:
https://github.com/aertslab/pySCENIC/blob/master/notebooks/pySCENIC%20-%20Integration%20with%20scanpy.ipynb
Everything runs smoothly until the…
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### Description of the bug
Hi,
I am trying to analyze with Sarek a few exomes with paired-end reads of 151nt, that incorporate UMIs in R1 reads. When executing fgbio CallMolecularConsensusReads fa…
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I am trying to run STAR-Fusion (v1.9.0) using a custom CTAT genome. I am getting the error below when I try to run STAR-Fusion:
-ctat genome lib [/data/ngsc2data/VY_UO1_RNASeq_hg38/test/starfusioni…
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Can you please provide some guidance on what version of MPI / gcc you've used to compile and run bison?
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### Description of the bug
I have run chipseq workflow and I can not find the MACS2 result. I have checked the log file and it seemed that the steps after deeptools did not executed.
### Command use…
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Hello,
I'm having trouble getting dropulation in Drop-seq v3.0.0 and v3.0.1 to work. For v3.0.0 I receive the errors when I try to run:
```
AssignCellsToSamples: 40: Syntax error: "(" unexpecte…