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Teichlab
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bracer
BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
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Bump zipp from 3.15.0 to 3.19.1 in /docker_helper_files
#82
dependabot[bot]
closed
1 week ago
0
Dockerfile needs to change Phylip download link
#81
ulyssebaruchel
closed
2 days ago
5
Bump idna from 3.4 to 3.7 in /docker_helper_files
#80
dependabot[bot]
closed
1 week ago
0
Bump pillow from 10.0.1 to 10.3.0 in /docker_helper_files
#79
dependabot[bot]
closed
1 week ago
0
Bump pycryptodome from 3.18.0 to 3.19.1 in /docker_helper_files
#78
dependabot[bot]
closed
1 week ago
0
Bump fonttools from 4.40.0 to 4.43.0 in /docker_helper_files
#77
dependabot[bot]
closed
1 week ago
0
Bump pillow from 10.0.1 to 10.2.0 in /docker_helper_files
#76
dependabot[bot]
closed
3 months ago
1
Bump cryptography from 41.0.6 to 42.0.4 in /docker_helper_files
#75
dependabot[bot]
closed
1 week ago
0
Bump cryptography from 41.0.4 to 41.0.6 in /docker_helper_files
#74
dependabot[bot]
closed
4 months ago
0
Can BraCeR be used in other species' data?
#73
jchenpku
closed
9 months ago
1
Bump pillow from 10.0.0 to 10.0.1 in /docker_helper_files
#72
dependabot[bot]
closed
4 months ago
0
Bump cryptography from 41.0.3 to 41.0.4 in /docker_helper_files
#71
dependabot[bot]
closed
10 months ago
0
Bump cryptography from 41.0.2 to 41.0.3 in /docker_helper_files
#70
dependabot[bot]
closed
11 months ago
0
Bump cryptography from 41.0.1 to 41.0.2 in /docker_helper_files
#69
dependabot[bot]
closed
1 year ago
0
Fix docker build 2023
#68
NickEngland
closed
1 year ago
0
docker run failed on Mac
#67
limin321
opened
1 year ago
1
Bump numpy from 1.13.1 to 1.22.0 in /docker_helper_files
#66
dependabot[bot]
closed
1 year ago
1
Bump numpy from 1.13.1 to 1.21.0 in /docker_helper_files
#65
dependabot[bot]
closed
2 years ago
1
[Feature Request] Update the Biopython dependency
#64
jolespin
closed
1 year ago
2
Installation help. Get ~/.bracerrc set up and AssertionError on test.
#63
jolespin
closed
10 months ago
1
imgt gapped database
#62
zhouxinseeu
opened
3 years ago
0
Bump cryptography from 3.2 to 3.3.2 in /docker_helper_files
#61
dependabot[bot]
closed
1 year ago
2
test results differ from expected
#60
zhouxinseeu
closed
3 years ago
0
AssertionError: Species not found in resources
#59
zhouxinseeu
closed
3 years ago
0
Bump cryptography from 1.7.1 to 3.2 in /docker_helper_files
#58
dependabot[bot]
closed
3 years ago
0
bracer summarise returns ZeroDivisionError: float division by zero
#57
tAndreani
closed
3 years ago
1
Low alignment rate for healthy-donor b cells
#56
alexpan82
opened
4 years ago
5
Minor fix on paragraph 238
#55
kant
closed
4 years ago
0
Docker container is outdated and does not build
#54
antonkulaga
closed
11 months ago
2
IgBLAST crashes in docker container
#53
antonkulaga
opened
4 years ago
1
What is IGHDM subtype?
#52
SabrinaITNL
opened
4 years ago
2
graphviz error
#51
tAndreani
closed
4 years ago
2
Not all cells included in Bracer summarize output
#50
SabrinaITNL
closed
4 years ago
3
How to get the nice clonal network graph as in Nat.Methods publication?
#49
SabrinaITNL
closed
4 years ago
3
bracer summarize output description
#48
v-clarissa
opened
4 years ago
0
Running igblast --regions --scores options are not recognizes
#47
tAndreani
closed
4 years ago
1
Gencode Fasta link not available
#46
tAndreani
opened
4 years ago
3
Docker image Trinity "No recombinats found"
#45
SabrinaITNL
closed
4 years ago
3
Docker image: FASTQ not found
#44
SabrinaITNL
closed
4 years ago
7
BLAST step gives error and stops
#43
SabrinaITNL
closed
4 years ago
7
Error during bracer summarize
#42
tiagobrc
closed
4 years ago
3
Unrecognized error on MakeDB (MakeDb.py: error: unrecognized arguments: --regions --scores)
#41
tiagobrc
closed
4 years ago
2
Bump pyxdg from 0.25 to 0.26 in /docker_helper_files
#40
dependabot[bot]
closed
1 year ago
1
Bug fixes
#39
idalind
closed
4 years ago
0
summarise command on test_data fails
#38
UtaHar
closed
5 years ago
1
Parsing bugs
#37
idalind
closed
5 years ago
0
Please include version information for bracer
#36
Sabryr
opened
5 years ago
0
The identity of the assembled contig is too low（igblast）
#35
ZhuangZK
opened
5 years ago
0
Custom databases
#34
scharch
opened
5 years ago
4
Keep track of ambiguity?
#33
scharch
closed
5 years ago
1
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