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Is there currently a best practice for adding plink bed bim fam samples to geno snp ind datasets.
I've always 1st converted geno snp ind to plink using convertf , merged all plink data in plink, th…
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hello, I'm considering using this OVMF with the SNP VM. According to talks, I learned that the hash of kernel/initrd/cmdline should be inserted into the OVMF, and the OVMF needs to verify this hash wh…
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Dear Nick,
I'm wondering that if your XPCLR could deal with missing genotypes?
Previous XPCLR (Chen, et al., 2010.) format the missing genotypes with 9.
I used the same file format to run you…
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I have GWAS for two traits, both are based on the same sample (N=2000). The h2 of one of the trait is very small (0.0325), and the h2 of another one is larger than 1 (1.1843).
I wonder if it is due t…
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It work well when single trait is analyzed separately. However it fails when two traits are analyzed together using --rg.
Could you help me figure out it?
Thank you very much!
The details are as …
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Hi paturley,
There is no freq column in my summary data. I see that in other posts, you mentioned using the reference population to calculate MAF. I used 1000G data to limit SNP to SNP in summary, …
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Consider:
```cpp
future server_impl::apply_snapshot(server_id from, install_snapshot snp) {
_fsm->step(from, std::move(snp));
// Only one snapshot can be received at a time from each node
…
kbr- updated
5 months ago
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Hello,
I have used the credset() function with a threshold=0.99 at a region of 5800 SNPs, the results show that 5200 of these SNPs are included in the credible set.
I would not expect such a big nu…
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Dear Armando /or GONe team,
I have GONe running smoothly on my data, thanks to you Armando.
I, however, have a few questions regarding the output. Especially, the no. of monomorphic sites (SNPs)…
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Hello,
I am running it this way
```
sh runkmercalling.sh 63 100 /media/alessandro/porsche_des/reads_ARC_ancestor/GC047403.100X.fa.gz
$1:kmer-size $2:homo coverage $3:input.fq
63 100 /media/ale…
ghost updated
4 years ago