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When launching the job to load the EDAM vocabulary, the server gets a bad response from EBI:
```Performing EBI OLS Lookup for: EDAM_data:0005
Cannot find the ontology via an EBI OLS lookup: EDAM_dat…
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Currently TripalVocab and TripalTerm are completely database agnostic 🎉
Now we want to add functionality to these classes to allow extension modules to integrate with them. Specifically, to allow …
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## Changes
- Add `tripal_ws` as a dependency to the module.
- Make sure that other developers can override a single BrAPI call in their own module without having to duplicate all the code. This is n…
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Hello all,
Can someone please help me understand why Tripal V2 legacy modules are present in Tripal V3?
Thank you!
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This issue is specifically to upgrade [tripal/tripal/api/tripal.terms.api.inc](https://github.com/tripal/tripal/blob/7.x-3.x/tripal/api/tripal.terms.api.inc). **To take on upgrade of one of these func…
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NCBI RefSeq # for assembly: GCF_008802855.1
See https://gitlab.com/i5k_Workspace/workspace_roadmap/-/wikis/Adding-an-organism-CWL-update for full description of each task (requires gitlab login). We …
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This is not really an issue but a question about custom indices. We'd like to index additional fields for bundles beyond the default provided by the entities indexer. For example, there is a lot of in…
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To be backwards compatible with the `tripal_get_term_details` API function the tripal_vocab tables need the `url` and `urlprefix` columns.
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I'm running the example command below after creating the matching organism and project.
```
drush load-genotypes sample_files/sample.vcf sample_files/samples.list --organism="Lens culinaris" --v…
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I don't have the abbreviation and common_name columns populated for all organisms in my chado.organism table.
The obi__organism_linker tripal field therefore only displays a pair of parentheses, al…