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I come across a problem when apply this pipeline to mu ATAC-Seq data.
The error is:
```
[7c/09c5ba] process > CHECK_DESIGN (design_pe.csv) [100%] 1 of 1 ✔
[b4/ee799a] process > …
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## **Describe the bug**
I installed the pipeline a few days ago and am trying to test it on a small ATAC-seq dataset from ENCODE. The workflow spit out some fatal errors and stopped, seemingly after …
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See [Deprecate X_normalization](https://github.com/chanzuckerberg/single-cell-curation/issues/199) for background.
**Note**: Pending requirements related to the [The schema policy for PII and depr…
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Dear Dr Divate,
I am new with GUAVA-1. I got access to atac-seq data from a consortium (human brain samples). I have BAM aligned read data files and narrow peaks files for each subject, but when I r…
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Hi,
When running ananse influence (ananse newest version) I get a recursion error. I initially thought that I got the error, because of some of the new changes that were made in the influence.py f…
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Using STARE on single-cell sequencing data is very intriguing, and I'm very excited to see you can do this. I want to try STARE with my single-cell ATAC-seq data. But as part of my sanity check, I wou…
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Hello,
I got the following error when running export_pseudobulk() to generate pseudobulk ATAC-seq profiles. My data is seperate scRNA-seq and scATAC-seq from different cells but the same sample. All…
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Hello,
I did your last [tip](https://github.com/yuchaojiang/TRIPOD/issues/1#issuecomment-1266164097) I fix the first problem.
Now when the function getTrios returns empty and I don't receive any …
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This issue is a continuation somehow #72
I am showing an example in which we have snps with a prob_col value higher than the threshold but echolocatoR fails in assigning CS and PP to SNPs
acarras…
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