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**Are you using the latest release?**
If you are not using the latest release of funannotate, please upgrade, if bug persists then report here.
**Describe the bug**
A clear and concise descriptio…
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I got the following values in `samtools stats` output from samtools 1.11, which is the latest release at this time. (The full output is attached as [samtools-stats.txt](https://github.com/samtools/sam…
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The final output only have the headers but no values.
No error in the shell and Rmats gave no logs.
Any idea ?
`python /home/jp/Documents/Softs/rmats_turbo_v4_1_0/rmats-turbo/rmats.py --b1 /home/…
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Hey,
i am very interested in the joint somatic variant calling capabilities of octopus, as there is a significant lack in methods currently.
I have ten about 160x WGS cancer samples with one cor…
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Hi,
I have been using vcffilter to perform some filtering on my dataset.
I have made the file smaller to give an example of the bug.
If I run
```
vcffilter -g "DP > 2"
```
On this file.
```
##f…
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Dear Chris,
I am having trouble running capCmain, I am receiving the message:
`ERROR in main processing stage : cannot open file srt_aligned.sam.`
I have tried installing capC-MAP with conda …
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Hi all,
I am trying to run the tool with an in-house reference genome and I'm running into some issues. I have followed the instructions [here](https://github.com/abyzovlab/CNVpytor/blob/master/exa…
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It would be good to have at least a simple summary report for the reconstructed consensus sequence. This should include:
* used version of poreCov
* used tools and versions within poreCov
* basic…
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Since 4.0.9, we store the stats JSON directly inside backupmeta. This works well for small clusters, but fails catastrophically when the database size and table count becomes large.
The biggest¹ is…
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Hi Wouter,
When I run the Nanoplot with my `sequencing_summary.txt` file, I encountered the error.
This is my command line:
```
NanoPlot \
--threads 36 \
--summary sequencing_summary.…