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Hello!
I have sequenced 5 samples with barcoding on a R10 flow cell resulting in ~284 GB of fast5 data. I want to analyse this data using our GPU servers (see screenshot).
![2023-02-10 14_47_49…
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Hi @marcpaga , thanks for your work, we are a research group that is currently working on the bonito architecture, I have some questions for you:
- we are trying to replicate the paper results wi…
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### What happened?
I was running wf-human-variation on Ubuntu 20.04, with 4 A100s, I think it's the Docekr profile. I ran the following command, and then it crashed:
`sudo nextflow run epi2me-labs/w…
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### What happened?
I have a A100x4 DGX box at work. I am running workflow 1.5.2 passing "-b 256" for fixed batch size to dorado and set basecaller_chunk_size to a value that is one fourth of the numb…
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### Aims/objectives.
We want to assign each dataset in Sci-ModoM a Sci-Modom ID (SMID). Conceptually, this should match some sort of project/study. For each SMID, we can have 1+ EUF/bedMod files.
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python3 /home/niabguest/krishna/apps/nanopolish/scripts/nanopolish_makerange.py /home/niabguest/krishna/hyl2_basecalling/canu_assembly/trim_assembly/assembly_small/assembly.contigs.fasta | parallel --…
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I've tried increasing the batch size to something that using as much memory of the GPU but I am still getting something like estimated 2 year call time
```
(base) callum@dgt-gpu2:~$ dorado-0.3.0-…
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dorado barecalling: model config.toml file issue
#!/bin/bash
dorado="/mnt/c/Users/Rish/dorado/bin/dorado.exe"
model="/mnt/c/Users/Rish/dorado/bin/dna_r9.4.1_e8_sup@v3.6"
${dorado} basecaller $…
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Hi
I encountered an out-of-memory error while using Dorado. My input is a 325G pod5 and I'm running the basecaller on Dorado. I submitted the job on a Linux server with 470G of memory and 30 threads…
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which model from the following options should I select, when I have basecalled using the newest guppy version for R10.4.1 run with 400bs hac settings?
`-m medaka model, (default: r1041_e82_400bps…