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```
Hi:
I think this is more of a feature request, though I believe it would be very
helpful to the community.
It would be nice if the --sorted option worked on all sorted files, no matter
the orde…
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Arising from #59, explore use of Nextflow's support for a SunGridEngine [executor](https://www.nextflow.io/docs/latest/executor.html).
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when we use the funannotate annotate, there was an error message
(funannotate) [liuyuanchao@master01 /data/liuyuanchao/funannotate_test/Analysis/Volvariella_volvacea_V23]
$funannotate annotat…
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hi, I recently installed funannotate software, and an error was reported during testing.
(funannotate) [liuyuanchao@login ~]$ funannotate check --show-versions
------------------------------------…
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## Descripción del programa
Implementar la función subtract de bedtools (https://bedtools.readthedocs.io/en/latest/content/tools/subtract.html).
## Parámetros
Ninguno
## Inputs
- tupla…
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We could use [`std::fmt::Display`](https://doc.rust-lang.org/std/fmt/trait.Display.html) but what if we have VCF input and want to write, e.g. BCF output.
Currently, we're using standard outputting…
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I used 'chromap --preset chip -x ${ref} -r ${fasta} -1 test_1.fastq.gz -2 test_2.fastq.gz --TagAlign -o 01.result.tagAlign -t 2' to get bulk mapping result. However, the result format is 6-columns (sa…
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@sagnikbanerjee15
I found that in the final output, many genes are located in repeat regions.
It seems the soft masking of the genome doesn't work well.
Got any idea?
Thanks
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**Are you using the latest release?**
I'm using the latest version available in docker (v1.8.15)
**Describe the bug**
After I ran funannotate update, I got a message about several gene models that …
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**Submitting author:** @abhi18av (Abhinav Sharma)
**Repository:** https://github.com/wal-yan/target-methylseq-qc
**Branch with paper.md** (empty if default branch): master
**Version:** v2.0.0
**Editor…