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I tested out the `ukb_create_participant_ds` and `ukb_update_participant_ds` scripts created by @mih using condor to download a 1000 subject subset.
To start, I created a csv file with a list of th…
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Thank you very much for developing this software. But now I have some doubts about the BayesR. It's mostly about computation time. There are 202840 SNPs and 8438 subjects. I include three covariates…
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In one of my papers, I have defined several ancestry groups in the UK Biobank:
![table1](https://user-images.githubusercontent.com/11161036/127128268-09cb7576-5a11-4b4c-a757-b1cd91cc6cd4.jpg)
I wo…
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how to create my custiom dataset, if i use this model to training
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I am using this package to analysis heritability of diseases by GLMM.
My dataset compose of 23,000 individuals and 1.5 million markers.
I have run the example data correctly. This is the code used:…
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I'm using `ldpred2-auto` to compute genetic risk scores for phenotypes that are not assessed and I wanted to perform some sort of sanity check on the computed GRS. Therefore, I computed GRS for easy-t…
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This mapping loads the whole source data (hesin and hesin_diag) into memory, because we do some pandas dataframe operations on it (drop duplicates, merge). As the data is big (millions of records) and…
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**Mondo term (ID and Label)**
MONDO:0006448 'testicular teratoma (disease)'
**Reason for deprecation**
duplicate
**Term to be merged with**
MONDO:0018193 'testicular teratoma'
Are these tw…
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Hi Shing Wan,
I am using PRSice-2 to conduct pathway-based PRS analysis. I used --perm 10000 to get the empirical P-value for each pathway and found that the most significant empirical P-value under …