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Currently, it's not a high-priority issue, but we would need this upon publication.
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Environment seems unsolvable due to Abricate
```
% conda create -n test python=3 abricate
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from…
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Currently, conversion functions only take one input / output. Will be critical to allow multiple. Impl is easy, api less so (lots to consider: how the conversions, the js transformer, and the cli shou…
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from FEV_KEGG.KEGG.Organism import Organism
eco = Organism('eco')
running this simple test command raise the following error:
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] cert…
ghost updated
2 years ago
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A long time ago, @yochannah asked,
> I just noticed this very nice acknowledgement from BioJava in their new paper https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006791 and i…
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Hi there @eharr , @Priyesh000 , @LynnLy ,
I'm getting the following after running `snakemake --use-conda -j 10 --dry-run` on my own data after my test ran successfully:
```
Building DAG of jobs…
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Hi,
I would like to train the network with SILVA 138.1 SSU database using
`tfrec_train_kmer.sh -i SILVA_138.1_SSURef_NR99_tax_silva.fasta -v /vocabulary/tokens_merged_12mers.txt -o train.tfrec -…
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> I also noticed that I couldn't install package teachopencadd where was function seed_everything () because of the tensorflow-base.2.18.0 (something like this). Conda told me that I had corrupted fil…
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The error below seems to be arising from some software version incompatibility ? but it is not clear what. bowtie log is not empty, and bowtie version is 1.3.1
The digital haplotype is written into…
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Traceback (most recent call last):
File "igscout-master/tandem_cdr3_finder.py", line 561, in
OutputDDMatrix(d_genes, all_ds, tandem_ds, os.path.join(output_dir, "dd_heatmap.pdf"), label)
F…