-
-r|--pearsonCorrelation minimum of Pearson’s correlation coefficient between the two adjacent non-overlapping windows
0.5 for sample size (0, 30]
0…
-
Hi,
I found the batch method very useful to complete the cnv pipeline computation. I'm working with WES data, so I do not have "tumor" or "normal" bams, but with few try I found a clearer and less no…
-
Hi,
I have single-end sequenced maternal blood data.
I executed WISECONDOR and got result like this,
`# BAM information: #
Reads mapped: 4021312
Reads unmapped: 24027
Reads nocoord: 24027
Re…
-
Hi,
Could you please let me know the maximum number of CNV fragments can I feed into cnFreq?
I have tried something over 10,000 and it gives an error:
Did not detect identical genomic segments …
-
Thanks a lot for updating such a powerful tool continously
in the cnvkit docs, it recommend theta2, and give the command. but in fact the theta2 has someproblems and the author does not recommend usi…
-
I have shared a script for copywriter that works.
It takes ~2 hours for one sample on a node.
I tested on my samples with ~5kb deletion covering one exon of _IFNGR2_.
I have run both a 20kb and 10k…
-
### Report
Hi. Thank you so much for your efforts in developing this package. I've come across some difficulties when trying to start.
In short: I guess I've met a dependency issue. Could you shar…
-
This is a difficult problem with modelling hydraulic fractures in a shale reservoir. So small grid blocks (0.01 ft. and high permeabilities, 10,000 mD). The model will not run in OPM Flow, if I switch…
-
-
Morning, everyone,
I am a student, and I am looking to test a topology other than the one provided (BNN, CFL).
I'm sorry, I saw that there were a lot of open topics on the same problem.
but is…