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Hi,
I am getting this error...
> Could not resolve host: tabix.iobio.io
... when running this code:
`d
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### Description of feature
Use references from CTAT.
Allows to shorten reference building time and maybe call a few more fusions with STAR-fusion as it is optimised for this
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By chance, I have noticed the following odd behavior. Here to reproduce the issue:
```
wget ftp://ftp.ensembl.org/pub/current_fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.chromosome.1.fa.gz
gunzi…
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Dear Authors,
Thank you for this great tool!
I have been testing CrossMap with DBSNP v151 data and found one type of conversion that doesn't look correct.
For DBSNP rs202079816: given chr22:…
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Dear Doctor，
I used a VCF file that mixed 400 samples to distinguish the source of cells. The script ran without any issues, but did not produce a result file that could be judged. I would like to …
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Data and links to FTP sites for [human](http://www.gencodegenes.org/releases/21.html) and [mouse](http://www.gencodegenes.org/mouse_releases/4.html).
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Hello
I am trying to use ALFA on a yeast data set. I downloaded a gtf file from ENSEMBL, Saccharomyces_cerevisiae.R64-1-1.104.gtf, but I get a KeyError exception:
if "exon" in prev_features…
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Hi Teri,
I have been teaching this week and have had a couple of requests. Firstly, can we provide a link to the Ensembl genome browser. I think this is reasonable.
Second, can we link directly …
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I'm trying to find annotation data for GSE33377 (GPL5175) with no success.
I've already made various trials:
1. I used http://ailun.stanford.edu/platformAnnotation.php with the feature list, but it r…
nirnn updated
10 years ago
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POSTGAP never finishes my run, citing problems with VEP timing out for connection. It seems to be having problems with this SNP (not in the input dataset):
`CRITICAL - Failed to get proper response…