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Hello,
Thank your for your amazing job! Our biologists greatly appreciate your application!
I am currently working on a large dataset (around 60,000 cells for 40,000 genes), and I have an error du…
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Hi, first of all thanks for creating this package!
I am encountering a fatal error everytime I try to run pathfindR with the plot_enrichment_chart = TRUE option. I am using my own custom gene set (Sa…
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UI: https://qgraph.org/answer/aX2MWJgm
```
{
"message": {
"query_graph": {
"nodes": {
"n0": {
"ids": [
"MONDO:0005737"
],
"cat…
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Hi,
I cloned your repo and I'm trying your tutorial to understand a minimal worflow to compute spatially variable genes.
But there are some steps that I cannot understand.
This is your code fr…
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Hi iDEA team,
Thank you for the great package. Could you please tell me or provide a sample code for how to create a gene set database (gene specific annotation files in the tutorial) from gaf or …
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Hello,
I am trying to aggregate 10X multiome data (GEX+ATAC) using Seurat and Signac and got this error
```
Binding matrix rows
Error in intI(i, n = d[1], dn[[1]], give.dn = FALSE) :
invalid …
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>[HOMER]( http://homer.ucsd.edu/homer/)(Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis. It is a collection of command line p…
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Hi
I've produced a singularity container from the Dockerfile here: https://github.com/csbl-usp/CEMiTool/blob/master/docker/Dockerfile
I run this command:
```
srun -n 1 singularity exec --bind …
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I have a question about pvalue_louis as below. When p value =2.12E-28, pvalue_louis = 7.20E-26 (second row from bottom). this make sense to me. But when pvalue is 0, pvalue_louis is 0.99999XXX. it see…
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Hello,
UPDATE: I meant term_gene_heatmap() like in the code. Looking at too many codes. Sorry for the confusion.
I am running the same data sets though UpSet_plot() and term_enrichment_graph (…