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Hello Sir,
I hope you are doing well.
I am trying to use genome scope in order to know the percentage repeat content of the genome. I am having a hard time understanding the output. Can you plea…
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During development of a pipeline involving Genrich for integrating ATAC seq with ChIP-Seq for multiple marks, I wish to only call peaks on a few small regions. For this reason, it is desirable to be …
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Hello RGT,
Thanks for developing this amazing package.
I met the error `KeyError: "sequence 'chr22' not present"` when following the full-site test tutorial here (http://www.regulatory-genomics.org/…
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Thanks for all your work on this package!
I have a question regarding the p-values that are reported after using `rGREAT::getEnrichmentTable` . When running several datasets through the local analy…
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**Analysis of tested guide RNA’s used for gene editing via CRISPR to predict optimal future guide sequences**
Despite the apparent simplicity of this sequence matching strategy to target the CRISPR…
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Hi~
SubPhaser is a great piece of software, I have suffered some problems when I use this software to phase my diploid genome.
After the previous hic scaffolding, I got 22 superscaffolds, then I …
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还有一个问题请教,想要创建hg19的ref,我准备了hg19的gtf fasta 文件,test bam是你的demo bam,也报错跑不通
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Hi,
I have been trying to run the chip-seq workflow of seq2science. It starts but stops when 7% of the jobs are done.
```
seq2science --version
seq2science: v0.5.1
```
**To Reproduce**
Plea…
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Hi,
I am trying to run deeplasmid on the HPC at my workplace. The computer support team have installed the software. We have been trying it out and came across this error where it cannot find the …
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### Description of feature
One of the issues that repeatedly causes confusion amongst users of the rnaseq pipeline is the reference transcriptome annotation to be provided as GTF or GFF3 (_which is…