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We need to determine the best way to identify a reference species based on the assembled sequences (`contigs.fa`). Current ideas have touched upon MASH, but also Jspecies, etc. Still no solution.
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I tried to add the comment below to 'Severe T-cell immunodeficiency' in Protege, using the rdfs:comment annotation, and when I do, it breaks the build. Is this the wrong annotation?
Several disease…
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useful links
config current location Dropbox/pombase/PomBase_website/ensembl_track_config.tsv
https://www.pombase.org/jbrowse/index.html
https://browse.yeastgenome.org
old spreadsheet I started be…
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Hi,
I set up docker-apollo inside a `docker-compose.yml` file:
```
apollo:
image: quay.io/gmod/docker-apollo:latest
restart: always
ports:
- "8888:8080"
volumes:
- ./data//j…
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elife publication-type| scielo publication-type | pattern
---|---|---
book ✓|book|person-group[person-group-type=author], person-group[person-group-type=editor]?, edition, year, month?, day?, chapte…
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Hi IGV team! If you're amenable to it, I'd like to implement a few infrastructural improvements for igv.js: continuous integration and ES6 export. These have helped [Ideogram.js](https://github.com/…
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Hi,
I have a bcbio installed with GRCH37. Now that I have a client who is intersted in mm10. I was trying to do python bcbio_nextgen.py upgrade --genomes mm10 and I ran into Import Error for single…
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Dear Jon,
I looked thoroughly at my previous funannotate results (derived a month ago) and found that **funannotate-p2g.py** seems to fail. As a result, finally, out of 500,000 proteins, tblastn ha…
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Hi,
I'm trying to implement SCENIC, but regardless of which dataset I use, I keep encountering an error with the following command in Step 2:
motifs_AUC
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I was just trying to modify the tools section of the user specific settings file,
but when I add some lines there, then all the default values will be remove.
This would be my settings file before…