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I and @valerianilucrezia were discussing with @caravagn about what would be useful for the `simulate_seq` function to return.
As today, it returns only the sequencing results, but we feel like it w…
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Dear bwa-mem2 developers,
I am facing a problem with the generated log file after mapping with bwa-mem2 mem command. In the output to standard error, there are several non-ASCII. The attached pictu…
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I keep getting this error while running Ray
Rank 30: assembler memory usage: 342492 KiB
Critical exception: The length of the requested memory exceeds the CHUNK_SIZE: 4718592 > 4194304
Ray: RayPlatfo…
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Good afternoon Gabriel.
I have been experiencing some problems obtaining the contamination estimates.
I have mitogenomes from ancient human samples sequenced paired-end 2x75.
I have two cases with…
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Hi Tobias
I haven't dug closely into the source code for this, so apologies if this question is a bit lazy:
What are the metrics affects by using the optional `--bed` flag for `alfred qc`?
I…
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Hello!
I have cDNA and direct RNA Nanopore reads which contain poly-A/poly-T sequences and adapters/barcodes.
A friend suggested me to use pychopper to remove those poly-A/poly-T sequences and a…
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Hi,
I think I've gotten VarDict to run the past few days, but there are a few questions I don't really understand.
1) When I tried to run VarDict on WGS bam files without inputting region informati…
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Dear Shaked,
I get following error while running TRAPeS on our data:
2018-01-20 18:49:17.504397 Working on: test
2018-01-20 18:49:17.508777 Pre-processing alpha chain
2018-01-20 18:49:17.527181 …
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To talk about metagenomics integration into schema.
Field | Type | Options | Definition
-------|---------|----------- |--------------
`profiler` | `string` | | Can be any metagenomic profiler (i…