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Good afternoon,
I am using WGS data in bam format and when I attempt to use --WES false the pipeline fails with an error. I get this error whether --WES false is stated in the command line or if it…
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### Description of the bug
I'm using the docker image nfcore/tools to develop my pipelines and run schema build, but lately I am getting a permission denied issue when running the docker version.
##…
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### Have you checked the docs?
- [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [X] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules)
### …
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The script `makeSSMultiQCReport_nextFlow.pl` calls `bedtools` to get the number of reads in known hotspots. However, if `bedtools` fails for some reason (e.g. not enough memory), the script itself do…
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### Description of the bug
```
$ nf-core subworkflows test --profile docker
,--./,-.
___ __ __ __ ___ /,-._.--~\
|\ | |__ …
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I am trying to run a grch37 ref for a rnafuion/nf-core pipeline and it only fails at fusioninspector, help me to rectify and solve the issue
log:
Oct-04 20:49:49.064 [Task monitor] DEBUG next…
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In case of job failures due to cluster problems or wall times, we need a way to `resume` a processing.
If we were to do this outside `skyweavercpp` then, we need to synchronize the time across all…
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Hello,
I am hoping to run fastOMA on a dataset of 384 proteomes on a server with 72 cpus and 756Gb RAM.
When I tried to run it initially (using the line below) it maxed out the server (which was…
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https://cran.r-project.org/web/packages/chromoMap/vignettes/chromoMap.html
When @mberacochea has some script to produce GFF-like output of the annotations we could easily use ChromoMap to visualize…
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Hi, I have an error while trying to run the hic pipeline on the test data with the conda environment.
Looks like a python module is missing.
Thanks for your help
```
$ ./nextflow run nf-cor…