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hoelzer
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virify
A Nextflow implementation of the EBI VIRify pipeline for the detection of viruses from metagenomic assemblies.
GNU General Public License v3.0
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Unwrapped module inclusion is deprecated
#37
Vikash84
opened
3 years ago
2
comment
#36
hoelzer
closed
4 years ago
0
Dev
#35
hoelzer
closed
4 years ago
0
merge stuff
#34
hoelzer
closed
4 years ago
0
Dev
#33
hoelzer
closed
4 years ago
0
Revert "Update dev branch with recent master"
#32
hoelzer
closed
4 years ago
0
Update dev branch with recent master
#31
hoelzer
closed
4 years ago
0
Update VirSorter
#30
hoelzer
opened
4 years ago
0
add py script for IMG-VR
#29
hoelzer
closed
4 years ago
0
Dev
#28
hoelzer
closed
4 years ago
0
Output
#27
hoelzer
closed
4 years ago
0
Sankey
#26
hoelzer
closed
4 years ago
0
Pprmeta
#25
hoelzer
closed
4 years ago
0
Pprmeta
#24
hoelzer
closed
4 years ago
0
publishDir error for non-existing plot.tsv files
#23
hoelzer
closed
4 years ago
0
Virfinder
#22
hoelzer
closed
4 years ago
0
VirFinder with specialized model for euks
#21
hoelzer
closed
4 years ago
4
plot contig map
#20
hoelzer
closed
4 years ago
0
Provide databases directly w/o any download
#19
hoelzer
closed
4 years ago
1
plot_contig_map only for a selection of contigs
#18
hoelzer
closed
4 years ago
1
IMG/VR blast extension
#17
hoelzer
closed
4 years ago
4
execution summary
#16
hoelzer
closed
4 years ago
1
initial length filter as a optional parameter
#15
hoelzer
closed
4 years ago
1
add rename functionality, swith to py parse script again
#14
hoelzer
closed
4 years ago
0
Major revision
#13
hoelzer
closed
4 years ago
0
Testing with empty files
#12
hoelzer
opened
4 years ago
0
ChromoMap to visualize final annotations
#11
hoelzer
opened
4 years ago
1
Add error strategy for virfinder
#10
hoelzer
closed
4 years ago
0
Convert hmmscan tbl output to gff
#9
hoelzer
opened
4 years ago
0
Select a better example file...
#8
hoelzer
closed
4 years ago
0
hmmscan with --cut_ga parameter needs e-value filters
#7
hoelzer
closed
4 years ago
0
Phage annotation: PHANOTATE
#6
hoelzer
closed
4 years ago
2
Test simple assembly subworkflow
#5
hoelzer
closed
4 years ago
1
conda profile
#4
hoelzer
closed
4 years ago
1
kmer_freq.py not working
#3
hoelzer
closed
4 years ago
1
viruses.taxid
#2
hoelzer
opened
4 years ago
0
filter_reads is super slow
#1
hoelzer
closed
4 years ago
0