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Hi
Is there a way to add a ASV sequence table to an existing phyloseq object?
I know that this is possible when making a new phyloseq object if you start with a count table where the row names a…
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OTU tables (counts) will be permitted in CoNekT Grasses Microbiome.
Main models in mind:
* OperationalTaxonomicUnitMethod - will describe methods used for generation of OTUs (e.g., clustering al…
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hi!
I have some error of this function. Here is the code.
feature_table=read.xlsx("真菌丰度.xlsx",rowNames =T,sheet = 1)
sample_table=read.xlsx("sample.xlsx",rowNames =T,sheet = 1)
tax_table=read.xlsx…
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Hello all.
I have a problem when asking to calculate alpha diversities values. I run with this message:
Skip 'Chao1', 'ACE' and 'Observed' ...
Skip the index Fisher because of an error ...
The r…
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The annotation DB will contain many different targets, and it would be interesting to be able to easily see / query those definitions. This could also potentially lead to re-use of definitions for the…
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Risk factors for type 1 diabetes, including environmental, behavioural and gut microbial factors: a case–control study – Deborah Traversi – Scientific Reports
https://www.nature.com/articles/s41598-0…
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I noticed recently that the zotu table was missing entries/rows for zOTUs that were classified by insect. They also appear in the fasta file. E.g. the fasta contains 10675 zOTUs but the table only has…
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I am receiving a "segmentation fault" error when I try to run DEICODE auto-rpca. I've tried running it both in QIIME2 and standalone, with the standalone as the most recent version installed with con…
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I noticed that input table must be non-normalized raw OTU table，but i only have relative abundance table from metagenome，su as：
```
> df
Sample_1 Sample_2 Sample_3
genus_1 0.112418…
wfgui updated
5 months ago
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Some resources, e.g. the Reptile DB, contain many [chresonyms](https://en.wikipedia.org/wiki/Chresonym) for a name which the CoL would like to exclude. Manually flagging these names is very time consu…