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I have enjoyed using geNomad and find it to be a very useful tool. When geNomad identifies a plasmid or virus on a particular contig, is it saying that entire contig likely makes up the plasmid? Becau…
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### Description of the bug
Error in trimming. Nextflow can't find the library file : yusa_library.csv. Looks like this is getting passed through correctly as an input but not copying to the working…
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- [x] See read screening problem in issue #157
- [x] Mean Q score: Different results output to Terra data table and in Nanoplot HTML "mean_qual" result? Nanoplot max quality seems to be above mean q…
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### Description of feature
Added new functionalities and parametrs e.g. ´--force` `--plasmid` and other improved CDS annotation sensitivity
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Heya Torsten,
I'm inputing a FASTA file containing all my contigs and I keep getting this error?
'Abyss-85-2kbp.fasta' is not a readable non-empty FASTA file.
Any ideas? It's a simple file with jus…
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I wonder if this dataset still needs to undergo preprocessing steps such as quality control, redundancy removal, and pruning?
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Hi Team,
I have noticed a few observations which are given below. Please look into the below and do the needful.
**1.Tab, Nanoplasmid Construct Giveaway(Apply today and discover the Power of Sma…
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This is happening with one of our roundhound runs, but in general we know pandora undermaps reads to the PRGs. In some cases, heavy undermapping happens and this impacts genotyping. This is a breaking…
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### Mod source
PyAE Beta
### Which mod are you having an issue with?
- [X] pyalienlife
- [ ] pyalternativeenergy
- [ ] pycoalprocessing
- [ ] pyfusionenergy
- [ ] pyhightech
- [ ] pyindustry
- [ ] …
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**1. Left and top headings text for table needs to be in white color. Also, Table is not appearing properly.**
Please refer to the screenshots below and reference link:
**Preview:**
![image](https:…