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**Are you using the latest release?**
I used `mamba create -n funannotate funannotate` to install and use funannotate 1.8.11.
**Describe the bug**
ERROR: augustus --proteinprofile test failed, li…
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Hello,
First of all, thank you so much for this set of tools your lab shares. Really valuable.
I'm a "seasoned" molecular biologist, now giving my first few steps on bioinformatics. I've been re…
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I am trying to run RepeatMasker on the ComputeCanada supercomputer system. Using mostly default parameters, it is taking a very long time, it's timed out several times, I'm now up to 24 hours and it i…
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Hi!!
I would like to run TEtranscripts but my species of interest doesn't have a UCSC model yet. I have a low quality genome assembly and a very high quality transcriptome assembly for this species. …
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Hi!
I installed your program using the singularity img and I try to update the RepeatMasker libraries with the RepBase library I have. So I follow what was said in the issue #46, putting my Repbase D…
sigau updated
2 years ago
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**What do you want to know?**
Is there any solution to recover from an unfinished task?
I have killed the previous task by accident and all the output files are stored in the same dir. And I wondere…
BRNiu updated
2 years ago
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I am running braker2.1.5 in --etpmode --softmasking with rna-seq evidence and orthodb proteins as protein evidence. The run crashes with the following error:
`/bin/sh: 1: [[: not found`
`error: Pr…
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Hi,
I installed the docker version as described in the [docker section](https://github.com/TobyBaril/EarlGrey#earl-grey-installation-and-configuration-inside-a-docker-container-if-you-cannot-install-…
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I'm trying to create a SONIC file to run valor2 on 10x linked reads, but I get the following error message when building my SONIC file:
return_value is 0 - sw_score=bit. RepeatMasker .out file has …
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Bug reported by colleague Jon Wright:
`eirepeat run` command fails when the JIRA password file is inaccessible
```
PermissionError in line 34 of /ei/software/cb/eirepeat/1.1.0/x86_64/lib/python3.…