-
Hello,
I am getting an error message (not a warning) running SCTransform() that prevents further analyses of the RNA/SCT (using the WNN analysis of 10x Multiome, RNA + ATAC Vignette as a guide)
…
-
`samtools mpileup -r chrA:nnn-mmm` includes region `chrA:nnn-mmm` correctly, but for some combinations of BAM files it also returns pileups from the same coordinates on other contigs, for example `chr…
-
Hi,
Thanks for your wonderful work. It's very convenient to use sports1.1 to annotate smallRNAseq data. Once I got the results, I have a questions here:
1. For tsRNA results, I saw three types: *_…
-
Hello authors of variancePartition
Is an analysis with variancePartition valid for experiments with a low sample size? In my specific case, I have only six samples.
Thanks for the feedback.
…
-
Hello to all,
I have a question about salmon and more precisely the alignment part.
I use salmon on BAM files of RNAseq data and the problem is that I don't really know what to use as .
I used …
-
https://mp.weixin.qq.com/s/QXZgq-kefkiX1GwtKxvIUw
ixxmu updated
2 months ago
-
I am working through the tutorial about [RNA-Seq Data Pathway and Gene-set Analysis Workflows](https://bioconductor.org/packages/release/bioc/vignettes/gage/inst/doc/RNA-seqWorkflow.pdf) but the "Quic…
-
I have been trying to assemble a 10Mb genome with uncorrected nanopore data (3-4 chromosomes expected). We have a lot of data, is that the reason Flye fails at the end?
[2019-06-22 11:00:05] INFO: …
-
### Description of the bug
Running the Tomte pipeline on a single paired RNA-seq dataset, I run into a crash in the DROP modules.
I am running in the master branch.
Error pasted in the box be…
-
*This is for internal use only; if you'd like to open an issue or request a new feature, please open a bug or enhancement issue*
### Instructions
This document should be filled out prior to embark…