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https://mp.weixin.qq.com/s/ysVOFf8s1wbZmqx8XFwhAA
ixxmu updated
2 months ago
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I'm using pseudobulk on scRNA-seq data from a Seurat object to compare two groups of cancer patients (with TP53 mutation vs wild-type) using Deseq2.
The most differentially expressed gene is LRP6,…
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We have multiple datasets that we need to prepare:
# multimodal single-cell CRISPR screens:
- [ ] https://nature.com/articles/s41588-021-00779-1
- [ ] https://www.nature.com/articles/s4…
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Hello!
Firstly, I'd like to express my gratitude for providing phyloVelo!
I'm currently intrigued by the prospect of reproducing the phylogeny tree of C. elegans for the AB lineage using the pseu…
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Hello,
I am trying to apply CHOIR on my precomputed clusters from a method I developed. I am working with the PBMC3k dataset in fact.
Preprocessing is exactly followed step by step from here:
h…
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I'm working on analyzing scRNA-seq data using scvelo. I'm trying to merge two loom files (New_Alloxan_possorted_genome_bam_CLF5P.loom and THR_possorted_genome_bam_SI7SF.loom) containing gene expressio…
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I'm working on analyzing scRNA-seq data using scvelo. I'm trying to merge two loom files (New_Alloxan_possorted_genome_bam_CLF5P.loom and THR_possorted_genome_bam_SI7SF.loom) containing gene expressio…
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Hello,
I am seeing a problem with the NormalizeData() function. I asked this question on #2803, but I think it deserves it's own issue.
It appears that NormalizeData is introducing NAs that resu…
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https://mp.weixin.qq.com/s/al8mMIkVpvxUWpjoPw8joQ
ixxmu updated
4 months ago
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Hello dev team,
I would like to try out your new tool on my multiomics (scRNA&scATAC-seq) dataset. I processed it with Seurat and Signac. I dont have ArchR object. Is there a way to use Signac pro…
momur updated
7 months ago