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variant: https://scout.scilifelab.se/cust091/aliveswift/cancer/fdc84bb51b179c64b4c97008c8662761?cancer=yes
Has a COSMIC variant assigned to it: https://cancer.sanger.ac.uk/cosmic/mutation/overview?…
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Thanks a lot for your comprehensive software.
with vardict caller.
for a target sequencing of 100k panel, umitool get 1105 get variants, fgbio get 257 varians
for a target sequencing of 2000k…
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https://mp.weixin.qq.com/s/kyYdjbtTZOGQEFZZ1TLX_w
ixxmu updated
2 years ago
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Dear openCRAVAT team,
Based on our previous discussion regarding the OpenCRAVAT pathogenicity and cancer annotators based on 33 CRC vcf files uploaded in the web server (https://github.com/KarchinL…
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https://mp.weixin.qq.com/s/7sFpjbv5YCKpRNjBuVm8rA
ixxmu updated
2 years ago
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Hello,
I am trying to analyse a dataset generated using Sureselect XT-HS. I believe this technology generates duplex DNA data (see methods of this paper) but I am failry new working with UMIs and I…
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Deepvariant 1.0 is still not considering polyploid polyclonal tumor data analysis in consideration. Anything in the pipeline or any plug in?
**Setup**
- Operating system:
- DeepVariant versio…
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Hi!
Do you have any recent benchmarks regarding Tumor only variant calling (vs Mutect)?
Thanks,
Konstantinos
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Tooltip text for variants on individual model pages: can the text be updated slightly to include the following **bolded** text?
- "**Research Somatic** Variants are imported…."
- "**Clinical** Variant…
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https://mp.weixin.qq.com/s/vlt30h69UerOGJpdv9wKPw
ixxmu updated
2 years ago