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Hi,
I am using ONT data (minimap2 aligned) for trio multisample calling and am using the snf method of sniffles v2.0.6. There are a few points I would like to put a few points forward -
1) I hav…
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* dask-image version: 0.2.0
* Python version: 3.6.8
* Operating System: macOS 10.15.5 Beta
### Description
Right now I have a standard 2-D image, stored as a dask array. It's very large, since i…
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As the music fix always lets music continue playing on connect/transition if it's not gamestartup.mp3, this introduces an issue where a server can play some music file and it continues playing after m…
anzz1 updated
7 months ago
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Is there a way to specify the -r option per read? My samples are a mix of pacbio and nanopore reads. I was guessing the SV and SNP genotyping would be more accurate if I called on the whole population…
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Hi,
I am using svim-asm to identify the SVs from haplotype-resovled human genomes. However, there are multiple records in the same position, with same length and genotype, a case showed as followed…
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Hi there,
I'm trying to use SURVIVOR to merge matching tumour and normal vcfs generated by sniffles from PromethION data. However, this seems to be erroneously losing variants during the merge. I'v…
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Hey Brent,
I'm looking to run Excord on 1kG data from the NYU remap to GRCh38+alt.
Wondering 2 questions:
1. Can Excord work with streamed CRAMs?
2. Roughly how long and how much RAM is neede…
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### Operating system
Ubuntu
### Platform
64-bit x86
### OpenSlide Python version
1.3.1
### OpenSlide version
3.4.1
### Slide format
svs
### Issue details
when I read other SVS files, I can …
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**Describe the bug**
I am using WSIReader as either transform or SlidingPatchWSIDataset, the resultant maps are mirror flipped always.
**To Reproduce**
Steps to reproduce the behavior:
1. Go to …
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Hi,
I have recently aligned the [CHM13](https://github.com/marbl/CHM13) v1.0 assembly from the T2T consortium to the reference genome GRCh38.p13. I subsequently tried to detect SVs from the CHM13 a…