jmonlong manu-vgsv issues

jmonlong / manu-vgsv

https://jmonlong.github.io/manu-vgsv/

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Minor revisions

#118 jmonlong closed 4 years ago
0
Feedback from co-authors

#117 jmonlong closed 4 years ago
2
tiny revisions

#116 glennhickey closed 4 years ago
1
Minor intro and method things

#115 jmonlong closed 4 years ago
0
Exploration of the variant matching during evaluation

#114 jmonlong closed 4 years ago
0
Reread and addressing editor/reviewers comments

#113 jmonlong closed 4 years ago
0
Numbers in text and tables updated

#112 jmonlong closed 4 years ago
0
Evaluation by repeat type on one sample for vg

#111 jmonlong closed 4 years ago
0
Some text updates for new paragraph results

#110 glennhickey closed 4 years ago
0
New figures, threshold exploration, updated runtimes, no track changes.

#109 jmonlong closed 4 years ago
0
Some revisions

#108 glennhickey closed 4 years ago
0
Update thumbnail

#107 vincerubinetti closed 4 years ago
1
Update yeast sections in response to reviewers' comments

#106 eldariont closed 4 years ago
0
Metainformation updated

#105 edawson closed 5 years ago
1
testing

#104 jmonlong closed 5 years ago
1
Upgrade rootstock on 2019-06-03

#103 dhimmel closed 5 years ago
3
modify title

#102 glennhickey closed 5 years ago
0
Update yeast analysis

#101 eldariont closed 5 years ago
10
New figures, inc. per-size evaluation and polished example

#100 jmonlong closed 5 years ago
1
Funding

#99 jonassibbesen closed 5 years ago
1
Add funding information

#98 jmonlong closed 5 years ago
1
edits for flow, simplicity, and clarity

#97 ekg closed 5 years ago
4
pangenome or pan-genome

#96 ekg closed 5 years ago
1
Yeast: Sample graph evaluation on SV callset

#95 eldariont closed 5 years ago
11
v. minor edits.

#94 benedictpaten closed 5 years ago
0
Upload data on a public S3 bucket.

#93 jmonlong opened 5 years ago
1
DOI for the code repo before submission

#92 jmonlong closed 5 years ago
0
Minor changes and draft of acknoledgments/contribution/etc

#91 jmonlong closed 5 years ago
1
Rename SMRT-SV2 to SMRT-SV v2

#90 glennhickey closed 5 years ago
2
mention SV catalog sizes

#89 glennhickey closed 5 years ago
0
Add Acknowledgments, Competing Interests etc.

#88 jonassibbesen closed 5 years ago
7
Edits and comments for the methods section and supplementary material

#87 jonassibbesen closed 5 years ago
1
Paragraph: A graph-based structural variant genotyper for short-read sequence data

#86 jmonlong opened 5 years ago
0
Emphasize number of SVs in benchmarks

#85 glennhickey closed 5 years ago
0
Hard numbers in abstract

#84 glennhickey closed 5 years ago
0
Edits and comments for results section

#83 jonassibbesen closed 5 years ago
4
Edits and comments to abstract and introduction

#82 jonassibbesen closed 5 years ago
1
vg call figure

#81 glennhickey closed 5 years ago
1
Edits to the discussion section

#80 jeizenga closed 5 years ago
4
Remove misplaced comment

#79 jeizenga closed 5 years ago
0
Minor discussion edits

#78 glennhickey closed 5 years ago
0
Edit methods section

#77 jeizenga closed 5 years ago
2
Compare mapping to sample graph vs. mapping to full graph

#76 eldariont closed 5 years ago
4
Edits for the results section

#75 jeizenga closed 5 years ago
5
Edit introduction

#74 jeizenga closed 5 years ago
5
Edit the abstract

#73 jeizenga closed 5 years ago
1
Polishing the visualization of some SV examples

#72 jmonlong opened 5 years ago
6
Bedtools reference link not rendered properly

#71 jmonlong closed 5 years ago
1
Make a figure to illustrate the genotyping algo?

#70 jmonlong closed 5 years ago
8
Simulation with more errors to estimate upper limits for breakpoint errors

#69 jmonlong opened 5 years ago
0