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Hello,
When using FUNANNOTATE COMPARE for comparing to different genomes of the same species, should we convert the genomic coordinate between the two assemblies? I am intending to cam pare one geno…
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I've narrowed it down to a particular genome (B_erythrophleiGAS401.fna) from NCBI that is causing it to error. Here is a smaller dataset of two genomes that gives a similar error using the newest vers…
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Dear Jon,
Thank for the latest release of **funannotate**. I tried it on _Linum usitatissimum_ genome and almost everything went fine. However, InterProScan search is still running for 10+ days and…
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Hi Dr.Tang,
I'm doing a three species synteny and i notised that the size of rectangle in karyotype figure did not match the real length of the chromosomes.
For example, the No1 chromosome is the l…
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D3 version 4 supports canvas elements. Currently we are using SVG, which means each element drawn is added to the DOM. This often results in poor performance, such as when drawing larger micro-synteny…
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Some of the steps in building syntenic blocks depend on perl codes that are difficult to install and maintain. Replace them with python equivalents.
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Hello,
Why A3A align yourself on Inter-genomic comparison synteny is 5418 gene pairs, however, A3A align another genome (V.vinifera) is 10307 gene pairs?
![1](https://user-images.githubusercontent…
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Previously, alerts were shown within each component that dynamically loaded data. There was also an alert in the main header of the page that report how many micro-synteny tracks were loaded and align…
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I got the following error when running syri:
/path/syri/bin/syri -c out_m_i90_l100.coords -r ref.fa -q query.fa -k -d out_m_i90_l100.delta
any idea? thank you!
syri - WARNING - starting
multip…
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Despite the various benefits of computing macro-synteny blocks on-demand, pre-computed synteny blocks still have benefits of their own, such as KS values. Users should be able to choose whether to loa…