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added confidence measures for PTMs would be useful. For example, indicate presence of diagnostic ions or observation of expected neutral losses in PSMS.tsv.
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1. `sieur` is sometimes annotated as `function` but it should be a `title`
```
# hipe2022:document_id = GDL-1828-01-04-a-i0017
# hipe2022:date = 1828-01-04
# hipe2022:original_source = v1.4.1/…
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hi，
I download the vOTU.fna (There are 5251 vOTUs in there.)data in the text and used the MGV pipeline(https://github.com/snayfach/MGV/tree/master/viral_detection_pipeline), like this
````
cond…
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hi,isaisg!
I cannot find the matrix_Xanthomonadaceae_cog.tsv .Could you help me,please ?
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@sbarbosadataverse and I met today with folks from Harvard Library, Boston College and Open Forest Data to discuss plans for testing new metadata fields for describing 3D data. We'd like to add the me…
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## Introduction
In [this section about the modality agnostic phenotypic data](https://bids-specification.readthedocs.io/en/stable/03-modality-agnostic-files.html#phenotypic-and-assessment-data), th…
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Dear pavian support team,
I am trying to make one sankey figure for my classification output - **gtdbtk.bac120.summary.tsv.txt**, I also transferred the gtdbtk.bac120.summary.tsv to format like **g…
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Hi,
I have just installed diamond (v.2.1.9) using homebrew on M2-mac.
I am running the examples from the "tutorial section" and getting some error. I can not find any information about this one, see…
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If the user provides gzip'ed fasta files as input to `checkm2 predict`, the `.gz` extension is not include in the values of `Name` column in the quality report. This causes issues for downstream appl…
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Thanks for your open source, very nice work。
I have a small questiion. In the final step of sam3d.py, we generated .pth files containing group_ids for each scene, such as Scene0000_0.pth for scene Sc…