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LowRankModels implements a Loss type that is eerily similar to this API. It implements value and derivative as well as M-estimators for several losses implemented here (L2, L1, Huber, Logistic, Hinge)…
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It would be useful for searching when using aliases that support British English. There are a few examples but there are likely more.
**HPO term**
**Synonym to be added**
Pediatric == Paediat…
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The goal of this ticket is to prototype FAIRification process for datasets that in ArrayExpress and GEO but don't exist in either DCP or SCEA
Proposed datasets
https://www.ebi.ac.uk/arrayexpress/…
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This is a log file. I don't know why I got the error message for only one sample of over 1000 samples.
Please check the below error message.
INFO [2019-12-26 10:42:52] -------------------------…
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From @bsmarine
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Open to other suggestions on optimal work flow.
Initial thought is to have the following:
1. User clicks menu pull down for either "Auto Segmentation" or …
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Hello,
I just updated to the newest version of pVACseq and am seeing this error, this wasn't present in an earlier version:
```
An exception occured in thread 7: (, Command '['/bin/bash', '-l',…
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"GO:0051819 induction of tumor, nodule, or growth in other organism involved in symbiotic interaction" and "GO:0009877 nodulation" are not related close to one another in the BP ontology, which might …
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Hi,
is there a way to include vcfs generated by other callers, like freebayes ?
Thanks
Gianfilippo
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@mbaudis @julesjacobsen @cmungall @mellybelly
The Histologic grade of a tumor (the element ``tumor_grade`` of the ``biosample`` of a phenopacket) describes the histologic appearance of a tumor, an…
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Hi, I have run three variant caller, including mutect2, vardict, freebayes, to call variants on tumor-only samples. the numpass parameter is set 2, i.e. when two callers support one mutant then output…