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I'm trying to load in a VCF file for:
snps_from_vcf
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Would it be possible to add support for regular vcard contact information?.
The use case would be:
1. User adds a button
2. Instead of a link, contact information related to vcard standard are as…
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Dear @zhengxwen / @zhengxw-ab ,
Hope you are keeping well.
I was trying to merge two samples:
`seqMerge(c("sample_1.gds", "sample_2.gds"), "merged.gds", storage.option="LZMA_RA", verbose=TRUE))…
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Extracting same column with vcf_to_dataframe gives error as shown in screenshot. is this correct behaviour (in which case how to i extract the WIT column) or is it a bug?
![Screenshot 2020-01-08 at…
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Hello,
I'm running MonsTR with the following options:
`MonSTR \
--strvcf Family_681_209.gangSTR_filtered.CR80.vcf.gz \
--fam families.fam \
--max-num-alleles 100 \
--include-invariant \
--g…
bibb updated
10 months ago
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Hello -
I am trying to run GLNExus to combine gVCFs produced by DeepVariant. The input is 16 single-sample gVCFs, aligned to the rhesus macaque genome. I split the job to run one contig at a time, …
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### Description of the bug
hello I have an error when I ran the nextflow sarek pipeline:
`nextflow -bg run nf-core/sarek -r 3.4.0 -params-file params_samplesheet_F52_3.json -profile docker &
Wo…
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Hi,
I'm working with SV callsets produced by sniffles2 (v2.0.7). For deletions, the ALT sequence in the VCFs are alwasy set to `N`, while the REF field contains the reference sequence. For insertio…
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HI,
sniffles2 VCF results contain sequences in lower case while the reference genome is higher case in that location.
This leads to crashing when I phase the VCF using hiphase (https://github.com/…
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Mainly MIP VCFs and their indexes are being saved in Housekeeper with the same tags:
We have in Hermes specific tags for index files that are currently not used for MIP:
https://github.com/Cli…