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When using BLAST+ => 2.5.0, the Description values in the Report are integer values. When I use BLAST+
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Hi Simon,
Me again. I am using the docker version of VirSorter. It looks like the `--ncpu` command is not working.
When I launch an instance of VirSorter. I get the following output:
```
$ do…
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Dear authors,
I am attempting to build kraken database for version 1.0:
```
DBNAME="/mnt/nfs/projects/ecosystem_biology/databases/kraken_standard_20171205"
echo "Building database with 72 th…
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Hi,
I'm starting to use MinION sequencing to sequence ~450-550bp amplicons. This is done to set up a sensitive assay to get a complete viral genome in the end (with overlapping amplicons). I would …
BOM86 updated
6 years ago
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I am having a problem installing gatk
As you can tell I am new to linux
Ubuntu 14lts
I installed the viral-ngs pipeline using the easy deploy shell script.
I can activate the viral-ngs environ…
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Is it possible to add plasmids protein sequences from Refseq as a reference database?
ftp://ftp.ncbi.nih.gov/refseq/release/plasmid/
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follow on from
https://github.com/pombase/curation/issues/1831
We should add
- [x] C-terminal protein lipidation
- [x] inositol phosphate metabolic process
(partly because these are in he…
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Hi,
I tried creating a new custom database, but when running the pipeline I get the following error:
```
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 all
1 c…
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Hi Derrick,
Can you please help on the following issue:
bhaley@NextSeq-Server:/**$ ./kraken-build --standard --db /**/kraken_DB
Found jellyfish v1.1.11
--2016-03-08 17:40:58-- ftp://ftp.ncbi.nih.g…
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Hi,
I am trying to download all viral sequences from genbank in fasta format, equivalent of the search:
` ((viral)) AND "viruses"[porgn:__txid10239]`
This package looked very promising, so I tried …