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We have represented known frameshifts in the genome sequence as 1-2 bp overlaps in CDS features (we were once advised by Ensembl that this was the correct way to annotate these). This is necessary …
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Hi,
Thank you for this tool. I get errors when trying to download files from https://regepi.bwh.harvard.edu/circurna/bundle_v1/db/nt - for example:
java -jar COMPSRA.jar -tk -dr -ck blast_bact…
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I am wondering how can i add something like [Pseudomonas aeruginosa ](https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa#:~:text=Pseudomonas%20aeruginosa%20is%20a%20common,of%20considerable%20medica…
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I am very interested in the development of human genetics. Genome editing, stopping aging at the genetic level and genetic modification.
**USSR Genetic**
I was surprised when I learned that in the U…
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Hello community,
I recently performed a metagenomic analysis on sequencing data generated from a zymomock community by Nanopore Sequencing (MinION) and wanted to assess the sequencing bias by using…
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http://www.htslib.org/doc/samtools.html says:
```
The search order to obtain a reference is:
Use any local file specified by the command line options (eg -T).
Look for MD5 via REF_CACHE environm…
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### Your GTNH Discord Username
BlueHero233
### Your Pack Version
2.6.1
### Your Proposal
Proposition: there is no "brewery multiblock" the bacterial vat does that, but there is no biomass from sa…
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I have a second switch to run uv lamp with disabled radar.
After some updates I have an error and my switch doesnt work. I think this issue caused update of Python.
```
- platform: template
…
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Hi Chenhao,
we discovered an issue with the contamination pipeline from this repo. Shortly, BWA default seed (k=19) allows 'random' alignments of bacterial reads against the human genome. This issu…
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Hello Everyone,
I am currently using Tombo version 1.5 on our uni HPC to analyze some bacterial modifications in DNA. Before we used fast5 data which included the basecalls so i could just start w…