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**Description**
**Sub-lineage of**: B.1.351 (1557 sequences)
**Earliest sequence**: 2021/01/13 (Equatorial Guinea)
**Most recent sequence**: 2021/08/17 (Spain)
**Countries circulating**: Spain (12…
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When using the PUSHER inference engine, we have observed a few assemblies, [(two samples attached)](https://github.com/cov-lineages/pangolin/files/6909491/PUSHER_fails.txt), that lead to a pangolin fa…
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The newest version of RepeatMasker 4.1.1 [uses h5py and requires python 3](http://www.repeatmasker.org/RepeatMasker/), but this is not listed in the dependencies.
Since MAKER requires python 2 and …
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I have read all of the current and previous issues, attempted all recommended fixes, and I still am unable to run my build.
I have included the references in my builds.yaml file, I have made sure …
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GO:0032775 | DNA methylation on adenine | IBA with MGI:1924031 , PTN000375324 , Q8N3J2 , WBGene00015939
Pombe does not have DNA methylation (Nor S. cerevisiae, as far as I know @srengel ?)
I…
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I imagine it would be useful to have a means of converting genealogies inferred by sarge to the tree sequence format for the figure comparing the output of inference methods? I don't think this has be…
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**Current Behavior**
Sanitized metadata contains lots of header rows, which were not in the input metadata. It seems sequences were processed in batches of 100000 and then concat together instead of …
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Please fill out the template below and click "submit" to request a trait dataset to the Open Traits Network. Please allow for some time for @open-traits-network/editors to review your submission.
`…
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Complete gene and gene description data for all the four species. Phavu is already done.
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When studying a recent global tree, I noticed that current designations for AY.30 actually seem to comprise two monophyletic lineages that are very far apart within Delta. One cluster (the correct AY.…