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The gene alignment step can take a long time to complete. Is it possible to add functionality to output the unaligned gene sequences to later align batches of them across a computing cluster? The pira…
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**Assignee:** Ali Haider Bangash
The first step is to identify what data could be integrated through a knowledge graph and what is available. What did the other Hackathon teams accomplish? What is …
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Hello, I read your project, but I have a question, is the project could be runned given the amino acid sequence and get the RNA sequence? Looking forward to your letter.
Best regards.
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Hi Kimmo
I'm Trying to launch PhageBoost command line on 1 of my dataset, and I get this super long error. It looks like a cython issue?
Install wise I followed the Pypi instructions.
Here is the …
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I've tested gmove on a plant genome and get a correct busco score ~ 93% of complete for the provided transcripts.
The number of generated UTRs is very low.
160288 CDS
34152 mRNA
1569 UTR
…
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## Expected Behavior
Hi,
I'm trying to convert a SAM file created from a search result but I get this error:
(mmseqs) moshea@shannon:/mnt/scratch$ samtools view -Sb SRR5234505.sam > SRR5234505.…
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the `
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## Expected Behavior
Do not write sequences in the output shorter than `--min-length`, which is 45 aa by default.
## Current Behavior
Sequences shorter than `--min-length` are being written …
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## Expected Behavior
easy-search should finish execution without errors
## Current Behavior
Error during pre-filter step
> Index table k-mer threshold: 0 at k-mer size 15
> Index table: …
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As currently implemented, slicing a SeqLike that contains AA and NT records yields:
1. a simple behavior when the AA record is primary, and
2. a slow and less robust behavior when the NT record is…