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Hi,
I am trying to use TEtranscript for an organism for which you don't provide the TE annotation file.
I build the GTF file myself, using rmsk tables from UCSC, assigning repName to gene_ID attribut…
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## Expected Behavior
Run rbh using computer clusters.
## Current Behavior
I am running 'mmseqs rbh' within 1000 jobs in parallel using High-performance computing. But there are always some jobs fai…
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I just encountered this error when running RGI version 5.0.0 with biopython 1.72 and blastn 2.9.0:
```
Traceback (most recent call last):
File "/home/fredrik.boulund/.conda/envs/resistance2/lib…
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### Setup
I am trying to draw a digram of a Ti plasmid genbank file using biopython, one of the code is to add features to empty feature set:
The code is:
gd_feature_set.add_feature(feature, co…
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**Are you using the latest release?**
Using version 1.7.2
**Describe the bug**
```
[02:14 PM]: Found 7 clusters, 14 biosynthetic enyzmes, and 19 smCOGs
predicted by antiSMASH
[02:14 PM]: Fo…
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## Expected Behavior
I should get a result_mmseqs2 and tmp file corresponding to the research.
I ran the following command to do so:
`/beegfs/data/eludoc/TOOLS/MMseqs2/build/bin/mmseqs sear…
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Hey,
I'm pretty new to hyphy and thus my questions might sound a bit naiive. I wanted to test a large set of MSA's for positive and negative selected sites, but also get estimates of dn/ds. This is d…
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Hi,
I got the coverage map of each contigs but I had no idea what does it mean... I assume "=" means aligned area while "..." means unaligned. But what does the "/" mean?
Thank you!
best,
nan
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@cschu @gemygk
I would like to get your views on adding rules for BUSCO, running against the genome, final output files and running against the prepare output then creating an external metric based …
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Dear Sergie,
I have used BUSTED to infer positive selection on my foreground branches which are 4 bees. In the output file, BUSTED found no evidence of positive selection in the selected test bran…